HL_4KR2_006

3D structure

PDB id

4KR2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glycyl-tRNA synthetase in complex with tRNA-Gly

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KR2_006 not in the Motif Atlas

Geometric match to HL_5E6M_003

Geometric discrepancy: 0.1365

The information below is about HL_5E6M_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4KR2|1|C|G|53||||2_565
4KR2|1|C|U|54||||2_565
4KR2|1|C|U|55||||2_565
4KR2|1|C|C|56||||2_565
4KR2|1|C|G|57||||2_565
4KR2|1|C|A|58||||2_565
4KR2|1|C|U|59||||2_565
4KR2|1|C|U|60||||2_565
4KR2|1|C|C|61||||2_565

Current chains

Chain C

Gly-tRNA-CCC

Nearby chains