HL_4KVB_008

3D structure

PDB id

4KVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KVB_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1082

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4KVB|1|A|C|320
4KVB|1|A|A|321
4KVB|1|A|C|322
4KVB|1|A|U|323
4KVB|1|A|G|324
4KVB|1|A|A|325
4KVB|1|A|G|326
4KVB|1|A|A|327
4KVB|1|A|C|328
4KVB|1|A|A|329
4KVB|1|A|C|330
4KVB|1|A|G|331
4KVB|1|A|G|332
4KVB|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20