HL_4KVB_012

3D structure

PDB id

4KVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

CGAGGAG

Length

7 nucleotides

Bulged bases

4KVB|1|A|G|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KVB_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.0944

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4KVB|1|A|C|458
4KVB|1|A|G|459
4KVB|1|A|A|460
4KVB|1|A|G|461
4KVB|1|A|G|462
4KVB|1|A|A|463
4KVB|1|A|G|474

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16