HL_4KZX_018

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

4KZX|1|i|G|832, 4KZX|1|i|C|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZX_018 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.5439

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4KZX|1|i|C|829
4KZX|1|i|C|830
4KZX|1|i|C|831
4KZX|1|i|G|832
4KZX|1|i|A|833
4KZX|1|i|G|834
4KZX|1|i|C|835
4KZX|1|i|C|836
4KZX|1|i|G|837

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4X

Chain J

40S Ribosomal protein S9

Chain Y

40S ribosomal protein S24