HL_4KZX_034

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

4KZX|1|i|G|1660

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZX_034 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.1465

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4KZX|1|i|G|1653
4KZX|1|i|U|1654
4KZX|1|i|C|1655
4KZX|1|i|A|1656
4KZX|1|i|U|1657
4KZX|1|i|A|1658
4KZX|1|i|A|1659
4KZX|1|i|G|1660
4KZX|1|i|C|1661

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain T

40S ribosomal protein S19

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29