HL_4KZY_014

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZY_014 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2289

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4KZY|1|i|A|559
4KZY|1|i|C|560
4KZY|1|i|U|561
4KZY|1|i|U|562
4KZY|1|i|U|563
4KZY|1|i|A|564
4KZY|1|i|A|565
4KZY|1|i|A|566
4KZY|1|i|U|567
4KZY|1|i|C|568
4KZY|1|i|C|569
4KZY|1|i|U|570
4KZY|1|i|U|571

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain J

40S Ribosomal Protein S9

Chain Y

40S Ribosomal Protein S24