HL_4KZZ_005

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CAGCCUCCCCGCCGGCCGGGGGGGUGGGGC*G

Length

31 nucleotides

Bulged bases

4KZZ|1|i|C|243, 4KZZ|1|i|C|244, 4KZZ|1|i|U|245, 4KZZ|1|i|C|246, 4KZZ|1|i|C|247, 4KZZ|1|i|C|248, 4KZZ|1|i|C|249, 4KZZ|1|i|G|250, 4KZZ|1|i|C|251, 4KZZ|1|i|C|252, 4KZZ|1|i|G|253, 4KZZ|1|i|G|254, 4KZZ|1|i|C|255, 4KZZ|1|i|C|256, 4KZZ|1|i|G|257, 4KZZ|1|i|G|258, 4KZZ|1|i|G|259, 4KZZ|1|i|G|260, 4KZZ|1|i|G|261, 4KZZ|1|i|G|262, 4KZZ|1|i|G|263, 4KZZ|1|i|U|264, 4KZZ|1|i|G|265, 4KZZ|1|i|G|266, 4KZZ|1|i|G|267, 4KZZ|1|i|G|268, 4KZZ|1|i|C|269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4KZZ|1|i|C|240
4KZZ|1|i|A|241
4KZZ|1|i|G|270
4KZZ|1|i|C|243
4KZZ|1|i|C|244
4KZZ|1|i|U|245
4KZZ|1|i|C|246
4KZZ|1|i|C|247
4KZZ|1|i|C|248
4KZZ|1|i|C|249
4KZZ|1|i|G|250
4KZZ|1|i|C|251
4KZZ|1|i|C|252
4KZZ|1|i|G|253
4KZZ|1|i|G|254
4KZZ|1|i|C|255
4KZZ|1|i|C|256
4KZZ|1|i|G|257
4KZZ|1|i|G|258
4KZZ|1|i|G|259
4KZZ|1|i|G|260
4KZZ|1|i|G|261
4KZZ|1|i|G|262
4KZZ|1|i|G|263
4KZZ|1|i|U|264
4KZZ|1|i|G|265
4KZZ|1|i|G|266
4KZZ|1|i|G|267
4KZZ|1|i|G|268
4KZZ|1|i|C|269
*
4KZZ|1|i|G|270

Current chains

Chain i

18S Ribosomal RNA

Nearby chains