HL_4KZZ_030

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

AGCGGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZZ_030 not in the Motif Atlas

Geometric match to HL_3SUX_002

Geometric discrepancy: 0.1372

The information below is about HL_3SUX_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4KZZ|1|i|A|1417
4KZZ|1|i|G|1418
4KZZ|1|i|C|1419
4KZZ|1|i|G|1420
4KZZ|1|i|G|1421
4KZZ|1|i|U|1422

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain T

40S Ribosomal Protein S19