HL_4L47_172

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4L47_172 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0731

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4L47|1|YA|G|978
4L47|1|YA|G|979
4L47|1|YA|A|980
4L47|1|YA|A|981
4L47|1|YA|C|982
4L47|1|YA|A|983
4L47|1|YA|A|984
4L47|1|YA|C|985

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YU

50S ribosomal protein L20