HL_4LF4_013

3D structure

PDB id

4LF4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LF4_013 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2298

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4LF4|1|A|G|521
4LF4|1|A|C|522
4LF4|1|A|A|523
4LF4|1|A|G|524
4LF4|1|A|C|525
4LF4|1|A|C|526
4LF4|1|A|7MG|527
4LF4|1|A|C|528

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12