HL_4LF5_004

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

4LF5|1|A|U|190|||E, 4LF5|1|A|G|190|||F

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LF5_004 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.0833

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4LF5|1|A|C|190|||B
4LF5|1|A|C|190|||C
4LF5|1|A|U|190|||D
4LF5|1|A|U|190|||E
4LF5|1|A|G|190|||F
4LF5|1|A|G|190|||G

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

ribosomal protein S17