HL_4LF5_007

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LF5_007 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0797

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4LF5|1|A|U|296
4LF5|1|A|G|297
4LF5|1|A|A|298
4LF5|1|A|G|299
4LF5|1|A|A|300
4LF5|1|A|G|301

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain E

ribosomal protein S5

Chain L

ribosomal protein S12

Chain Q

ribosomal protein S17