HL_4LF9_034

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

CAGCC(7MG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LF9_034 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.0443

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4LF9|1|A|C|522
4LF9|1|A|A|523
4LF9|1|A|G|524
4LF9|1|A|C|525
4LF9|1|A|C|526
4LF9|1|A|7MG|527

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12