HL_4LFA_008

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFA_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0616

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4LFA|1|A|C|320
4LFA|1|A|A|321
4LFA|1|A|C|322
4LFA|1|A|U|323
4LFA|1|A|G|324
4LFA|1|A|A|325
4LFA|1|A|G|326
4LFA|1|A|A|327
4LFA|1|A|C|328
4LFA|1|A|A|329
4LFA|1|A|C|330
4LFA|1|A|G|331
4LFA|1|A|G|332
4LFA|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20