HL_4LFB_006

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4LFB|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4LFB|1|A|G|259
4LFB|1|A|G|260
4LFB|1|A|U|261
4LFB|1|A|A|262
4LFB|1|A|A|263
4LFB|1|A|U|264
4LFB|1|A|G|265
4LFB|1|A|G|266
4LFB|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

ribosomal protein S17

Chain T

ribosomal protein S20