HL_4LFC_008

3D structure

PDB id

4LFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFC_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0599

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4LFC|1|A|C|320
4LFC|1|A|A|321
4LFC|1|A|C|322
4LFC|1|A|U|323
4LFC|1|A|G|324
4LFC|1|A|A|325
4LFC|1|A|G|326
4LFC|1|A|A|327
4LFC|1|A|C|328
4LFC|1|A|A|329
4LFC|1|A|C|330
4LFC|1|A|G|331
4LFC|1|A|G|332
4LFC|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20