HL_4LFZ_112

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

4LFZ|1|XA|U|189, 4LFZ|1|XA|G|190, 4LFZ|1|XA|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_112 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.2187

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

4LFZ|1|XA|C|186|||F
4LFZ|1|XA|C|187
4LFZ|1|XA|U|188
4LFZ|1|XA|U|189
4LFZ|1|XA|G|190
4LFZ|1|XA|G|191
4LFZ|1|XA|G|191|||A

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XQ

30S ribosomal protein S17

Chain XT

30S ribosomal protein S20