3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
4LFZ|1|YA|G|1954, 4LFZ|1|YA|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4LFZ_194 not in the Motif Atlas
Homologous match to HL_7RQB_049
Geometric discrepancy: 0.17
The information below is about HL_7RQB_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_51824.1
Basepair signature
cWW-F-F-tSH-F-F
Number of instances in this motif group
8

Unit IDs

4LFZ|1|YA|G|1949
4LFZ|1|YA|G|1950
4LFZ|1|YA|U|1951
4LFZ|1|YA|A|1952
4LFZ|1|YA|A|1953
4LFZ|1|YA|G|1954
4LFZ|1|YA|U|1955
4LFZ|1|YA|U|1956
4LFZ|1|YA|C|1957

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YO
50S ribosomal protein L14

Coloring options:


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