HL_4LFZ_239

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4LFZ|1|RA|C|1493, 4LFZ|1|RA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFZ_239 not in the Motif Atlas

Homologous match to HL_9DFE_036

Geometric discrepancy: 0.2352

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4LFZ|1|RA|G|1492
4LFZ|1|RA|C|1493
4LFZ|1|RA|A|1494
4LFZ|1|RA|A|1495
4LFZ|1|RA|A|1496
4LFZ|1|RA|U|1497
4LFZ|1|RA|C|1498

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2