HL_4LNT_048

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4LNT|1|RA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LNT_048 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0804

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4LNT|1|RA|G|327
4LNT|1|RA|U|328
4LNT|1|RA|G|329
4LNT|1|RA|A|330
4LNT|1|RA|A|331
4LNT|1|RA|A|332
4LNT|1|RA|G|333
4LNT|1|RA|C|334
4LNT|1|RA|C|335

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24