3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
GAUCAGCCAUGC
Length
12 nucleotides
Bulged bases
4LNT|1|XA|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4LNT_138 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.0823
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4LNT|1|XA|G|1356
4LNT|1|XA|A|1357
4LNT|1|XA|U|1358
4LNT|1|XA|C|1359
4LNT|1|XA|A|1360
4LNT|1|XA|G|1361
4LNT|1|XA|C|1362
4LNT|1|XA|C|1362|||A
4LNT|1|XA|A|1363
4LNT|1|XA|U|1364
4LNT|1|XA|G|1365
4LNT|1|XA|C|1366

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XC
30S ribosomal protein S3
Chain XI
30S ribosomal protein S9
Chain XJ
30S ribosomal protein S10
Chain XM
30S ribosomal protein S13
Chain XN
30S ribosomal protein S14
Chain XU
30S ribosomal protein S21

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