HL_4LSK_116

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LSK_116 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1074

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4LSK|1|XA|C|320
4LSK|1|XA|A|321
4LSK|1|XA|C|322
4LSK|1|XA|U|323
4LSK|1|XA|G|324
4LSK|1|XA|A|325
4LSK|1|XA|G|326
4LSK|1|XA|A|327
4LSK|1|XA|C|328
4LSK|1|XA|A|329
4LSK|1|XA|C|330
4LSK|1|XA|G|331
4LSK|1|XA|G|332
4LSK|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20