HL_4LSK_144

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

GUUCGG(1MG)AC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LSK_144 not in the Motif Atlas

Geometric match to HL_3TUP_002

Geometric discrepancy: 0.1802

The information below is about HL_3TUP_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4LSK|1|XY|G|31
4LSK|1|XY|U|32
4LSK|1|XY|U|33
4LSK|1|XY|C|34
4LSK|1|XY|G|35
4LSK|1|XY|G|36
4LSK|1|XY|1MG|37
4LSK|1|XY|A|38
4LSK|1|XY|C|39

Current chains

Chain XY

messenger RNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain XL

30S ribosomal protein S12

Chain XM

30S ribosomal protein S13

Chain XX

A-site ASL SufA6

Chain YA

Large subunit ribosomal RNA; LSU rRNA