HL_4MEH_002

3D structure

PDB id

4MEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro evolved glmS ribozyme triple mutant, calcium ion complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAGGGCAGGGUAACA*C

Length

16 nucleotides

Bulged bases

4MEH|1|B|G|22, 4MEH|1|B|A|30, 4MEH|1|B|A|32, 4MEH|1|B|A|32

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4MEH_002 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1605

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4MEH|1|B|G|18
4MEH|1|B|A|19
4MEH|1|B|G|20
4MEH|1|B|G|21
4MEH|1|B|G|22
4MEH|1|B|C|23
4MEH|1|B|A|24
4MEH|1|B|G|25
4MEH|1|B|G|26
4MEH|1|B|G|27
4MEH|1|B|U|28
4MEH|1|B|A|30
4MEH|1|B|A|32
4MEH|1|B|C|33
4MEH|1|B|A|32
*
4MEH|1|B|C|33

Current chains

Chain B

(122-MER) ribozyme

Nearby chains

Chain A

glmS triple mutant ribozyme