HL_4MGM_001

3D structure

PDB id

4MGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGUGGUAG

Length

9 nucleotides

Bulged bases

4MGM|1|A|U|16, 4MGM|1|A|G|17, 4MGM|1|A|G|18, 4MGM|1|A|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4MGM_001 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.2023

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4MGM|1|A|C|13
4MGM|1|A|A|14
4MGM|1|A|G|15
4MGM|1|A|U|16
4MGM|1|A|G|17
4MGM|1|A|G|18
4MGM|1|A|U|19
4MGM|1|A|A|20
4MGM|1|A|G|21

Current chains

Chain A

tRNA glycine

Nearby chains

Chain B

tRNA glycine