HL_4NVV_052

3D structure

PDB id

4NVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4NVV|1|A|A|2280, 4NVV|1|A|C|2287

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41833.5

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

10

Unit IDs

4NVV|1|A|C|2276
4NVV|1|A|U|2277
4NVV|1|A|A|2278
4NVV|1|A|A|2279
4NVV|1|A|A|2280
4NVV|1|A|A|2281
4NVV|1|A|G|2282
4NVV|1|A|G|2283
4NVV|1|A|U|2284
4NVV|1|A|A|2285
4NVV|1|A|A|2286
4NVV|1|A|C|2287
4NVV|1|A|G|2288

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 0

50S Ribosomal Protein L27

Chain Q

50S Ribosomal Protein L16