HL_4NXM_004

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

4NXM|1|A|U|190|||E, 4NXM|1|A|G|190|||F

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NXM_004 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.1533

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

4NXM|1|A|C|190|||B
4NXM|1|A|C|190|||C
4NXM|1|A|U|190|||D
4NXM|1|A|U|190|||E
4NXM|1|A|G|190|||F
4NXM|1|A|G|190|||G

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

ribosomal protein S17

Chain T

ribosomal protein S20