HL_4NXM_008

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NXM_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.077

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4NXM|1|A|C|320
4NXM|1|A|A|321
4NXM|1|A|C|322
4NXM|1|A|U|323
4NXM|1|A|G|324
4NXM|1|A|A|325
4NXM|1|A|G|326
4NXM|1|A|A|327
4NXM|1|A|C|328
4NXM|1|A|A|329
4NXM|1|A|C|330
4NXM|1|A|G|331
4NXM|1|A|G|332
4NXM|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20