HL_4NXM_019

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NXM_019 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0822

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4NXM|1|A|C|862
4NXM|1|A|U|863
4NXM|1|A|A|864
4NXM|1|A|A|865
4NXM|1|A|C|866
4NXM|1|A|G|867

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

ribosomal protein S5

Chain H

ribosomal protein S8