3D structure

PDB id
4NXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
GGUUUUACU
Length
9 nucleotides
Bulged bases
4NXN|1|A|U|81
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4NXN_002 not in the Motif Atlas
Geometric match to HL_8H1B_001
Geometric discrepancy: 0.2556
The information below is about HL_8H1B_001
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_10453.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

4NXN|1|A|G|79
4NXN|1|A|G|80
4NXN|1|A|U|81
4NXN|1|A|U|82
4NXN|1|A|U|83
4NXN|1|A|U|84
4NXN|1|A|A|88
4NXN|1|A|C|89
4NXN|1|A|U|90

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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