HL_4NXN_008

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NXN_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0683

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4NXN|1|A|C|320
4NXN|1|A|A|321
4NXN|1|A|C|322
4NXN|1|A|U|323
4NXN|1|A|G|324
4NXN|1|A|A|325
4NXN|1|A|G|326
4NXN|1|A|A|327
4NXN|1|A|C|328
4NXN|1|A|A|329
4NXN|1|A|C|330
4NXN|1|A|G|331
4NXN|1|A|G|332
4NXN|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20