HL_4NXN_012

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4NXN|1|A|C|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NXN_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.1404

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4NXN|1|A|C|458
4NXN|1|A|G|459
4NXN|1|A|A|460
4NXN|1|A|C|461
4NXN|1|A|G|462
4NXN|1|A|A|463
4NXN|1|A|G|474

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16