HL_4NXN_018

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

4NXN|1|A|U|839, 4NXN|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NXN_018 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.2023

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

4NXN|1|A|G|838
4NXN|1|A|U|839
4NXN|1|A|C|840
4NXN|1|A|U|841
4NXN|1|A|C|848

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2