HL_4OX9_003

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4OX9_003 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.1205

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4OX9|1|A|G|158
4OX9|1|A|G|159
4OX9|1|A|A|160
4OX9|1|A|A|161
4OX9|1|A|A|162
4OX9|1|A|C|163

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20