HL_4OX9_008

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4OX9_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0658

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4OX9|1|A|C|320
4OX9|1|A|A|321
4OX9|1|A|C|322
4OX9|1|A|U|323
4OX9|1|A|G|324
4OX9|1|A|A|325
4OX9|1|A|G|326
4OX9|1|A|A|327
4OX9|1|A|C|328
4OX9|1|A|A|329
4OX9|1|A|C|330
4OX9|1|A|G|331
4OX9|1|A|G|332
4OX9|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20