HL_4OX9_034

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCCGCGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4OX9_034 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3504

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4OX9|1|A|C|1028
4OX9|1|A|C|1029
4OX9|1|A|C|1030
4OX9|1|A|G|1030|||A
4OX9|1|A|C|1030|||B
4OX9|1|A|G|1030|||C
4OX9|1|A|A|1030|||D
4OX9|1|A|G|1031
4OX9|1|A|G|1032
4OX9|1|A|G|1033

Current chains

Chain A

16S rRNA

Nearby chains