HL_4P5J_003
3D structure
- PDB id
- 4P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.99 Å
Loop
- Sequence
- GUGCAACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4P5J|1|A|G|46
4P5J|1|A|U|47
4P5J|1|A|G|48
4P5J|1|A|C|49
4P5J|1|A|A|50
4P5J|1|A|A|51
4P5J|1|A|C|52
4P5J|1|A|U|53
4P5J|1|A|C|54
Current chains
- Chain A
- Turnip yellow mosaic virus mRNA for the coat protein
Nearby chains
No other chains within 10ÅColoring options: