HL_4P6F_036

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4P6F|1|QW|C|17, 4P6F|1|QW|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_036 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1954

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

4P6F|1|QW|C|13
4P6F|1|QW|A|14
4P6F|1|QW|G|15
4P6F|1|QW|U|16
4P6F|1|QW|C|17
4P6F|1|QW|G|18
4P6F|1|QW|G|19
4P6F|1|QW|U|20
4P6F|1|QW|A|21
4P6F|1|QW|G|22

Current chains

Chain QW

E-Site tRNA-Phe or A-Site tRNA-Phe

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA