HL_4P6F_038
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4P6F_038 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.3383
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
4P6F|1|QW|G|53
4P6F|1|QW|U|54
4P6F|1|QW|U|55
4P6F|1|QW|C|56
4P6F|1|QW|G|57
4P6F|1|QW|A|58
4P6F|1|QW|U|59
4P6F|1|QW|U|60
4P6F|1|QW|C|61
Current chains
- Chain QW
- E-Site tRNA-Phe or A-Site tRNA-Phe
Nearby chains
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: