HL_4P6F_102

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_102 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.1052

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4P6F|1|RA|C|2594
4P6F|1|RA|G|2595
4P6F|1|RA|U|2596
4P6F|1|RA|G|2597
4P6F|1|RA|A|2598
4P6F|1|RA|G|2599

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain RD

50S ribosomal protein L2