HL_4P6F_103

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_103 not in the Motif Atlas

Geometric match to HL_5TBW_017

Geometric discrepancy: 0.0968

The information below is about HL_5TBW_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4P6F|1|RA|C|2658
4P6F|1|RA|G|2659
4P6F|1|RA|A|2660
4P6F|1|RA|G|2661
4P6F|1|RA|A|2662
4P6F|1|RA|G|2663

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RH

50S ribosomal protein L6