HL_4P6F_132

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_132 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1261

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4P6F|1|XA|U|1012
4P6F|1|XA|G|1013
4P6F|1|XA|A|1014
4P6F|1|XA|A|1015
4P6F|1|XA|A|1016
4P6F|1|XA|G|1017

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z

Chain XS

30S ribosomal protein S19