HL_4P6F_134

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_134 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0684

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4P6F|1|XA|C|1076
4P6F|1|XA|G|1077
4P6F|1|XA|U|1078
4P6F|1|XA|G|1079
4P6F|1|XA|A|1080
4P6F|1|XA|G|1081

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XE

30S ribosomal protein S5