HL_4P6F_148

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_148 not in the Motif Atlas

Homologous match to HL_4LCK_003

Geometric discrepancy: 0.2449

The information below is about HL_4LCK_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4P6F|1|XW|G|53
4P6F|1|XW|U|54
4P6F|1|XW|U|55
4P6F|1|XW|C|56
4P6F|1|XW|G|57
4P6F|1|XW|A|58
4P6F|1|XW|U|59
4P6F|1|XW|U|60
4P6F|1|XW|C|61

Current chains

Chain XW

E-Site tRNA-Phe or A-Site tRNA-Phe

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA