HL_4P6F_151

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

4P6F|1|YA|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_151 not in the Motif Atlas

Homologous match to HL_7RQB_003

Geometric discrepancy: 0.0866

The information below is about HL_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4P6F|1|YA|G|123
4P6F|1|YA|G|124
4P6F|1|YA|G|125
4P6F|1|YA|A|126
4P6F|1|YA|A|127
4P6F|1|YA|C|128

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YX

50S ribosomal protein L23