HL_4P6F_153

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

4P6F|1|YA|U|162

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_153 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.227

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4P6F|1|YA|C|155
4P6F|1|YA|U|161
4P6F|1|YA|U|162
4P6F|1|YA|G|171

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain Y1

50S ribosomal protein L28