HL_4P6F_163

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_163 not in the Motif Atlas

Homologous match to HL_7RQB_015

Geometric discrepancy: 0.0809

The information below is about HL_7RQB_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4P6F|1|YA|C|462
4P6F|1|YA|G|463
4P6F|1|YA|U|464
4P6F|1|YA|G|465
4P6F|1|YA|A|466
4P6F|1|YA|G|467

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YF

50S ribosomal protein L4