3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGGGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4P6F_164 not in the Motif Atlas
Homologous match to HL_7RQB_016
Geometric discrepancy: 0.0959
The information below is about HL_7RQB_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

4P6F|1|YA|C|487
4P6F|1|YA|G|488
4P6F|1|YA|G|489
4P6F|1|YA|G|491
4P6F|1|YA|A|492
4P6F|1|YA|G|493

Current chains

Chain YA
23S ribosomal RNA

Nearby chains

Chain YW
50S ribosomal protein L22

Coloring options:


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