HL_4P6F_176

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_176 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0961

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4P6F|1|YA|G|978
4P6F|1|YA|G|979
4P6F|1|YA|A|980
4P6F|1|YA|A|981
4P6F|1|YA|C|982
4P6F|1|YA|A|983
4P6F|1|YA|A|984
4P6F|1|YA|C|985

Current chains

Chain YA

23S ribosomal RNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YU

50S ribosomal protein L20