HL_4P6F_179

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_179 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.3352

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

4P6F|1|YA|G|1171
4P6F|1|YA|G|1173
4P6F|1|YA|A|1174
4P6F|1|YA|U|1175
4P6F|1|YA|G|1176
4P6F|1|YA|A|1177
4P6F|1|YA|C|1178

Current chains

Chain YA

23S ribosomal RNA

Nearby chains